I cleared the the last mission with only Patriots and it didn't award the resources. It actually only gave me 31,004 out of the 4 million which I'm guessing came from the HQ. I tried it a couple more times and the Patriots destroy the storages, but don't receive any resources from them.
There is something similar on Operation Pulsefire because I have 3 stars but there is still steel left. I used a mix of troops on it though so I didn't even notice until I looked back and saw it still has steel to collect. If anyone wants to check it out, might be helpful.