Defeated the boss with 1 commando and 1 operative in the team.

Note that there are 3 skills that can interrupt the boss and minions from using the console - singularity (comm), gravity well (comm) and lurch (oper). These 3 skills were sufficient to keep the boss and minions away from the console. We had to focus on killing the minions first, though, in order to lessen the number of enemies who can use the console.